PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G140700.1
Common NamePOPTR_0005s18400g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 514aa    MW: 57063.8 Da    PI: 6.8354
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G140700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.6e-17170219155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Potri.005G140700.1 170 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 219
                         78*******************......55************************997 PP

2AP243.67.3e-14262312155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Potri.005G140700.1 262 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDRAAMKCNG 312
                         89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-15170228IPR016177DNA-binding domain
PfamPF008476.0E-9170219IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-17171227IPR001471AP2/ERF domain
SMARTSM003802.1E-31171233IPR001471AP2/ERF domain
PROSITE profilePS5103217.53171227IPR001471AP2/ERF domain
CDDcd000182.27E-11171228No hitNo description
PfamPF008476.5E-10262312IPR001471AP2/ERF domain
CDDcd000187.88E-25262322No hitNo description
SuperFamilySSF541714.71E-17262322IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-16263320IPR001471AP2/ERF domain
SMARTSM003809.6E-31263326IPR001471AP2/ERF domain
PROSITE profilePS5103215.422263320IPR001471AP2/ERF domain
PRINTSPR003676.7E-6264275IPR001471AP2/ERF domain
PRINTSPR003676.7E-6302322IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MWNLNDSPDQ TRDDESEGCS SQKTSKDGEV DKGKRVGSVS NSSSSAVVIE DGSEEEDGCG  60
ERGDRIIKKH SISFSSSTSS KIFGFSVPYD QDSMDMSDPP VTRQFFPLED QEMGSTSSVG  120
GGDGGGGGFP RAHWVGVKFC QSDSSLVSQK SMEVSQPLKK SRRGPRSRSS QYRGVTFYRR  180
TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFRIED YEEDLKQMSN  240
LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEIEAA  300
RAYDRAAMKC NGKEAVTNFD PSIYENELGK QFNSEDIQES SGNAAAHNLD LSLGNPASKQ  360
SSIEFGQDRH NAAMEQLSAA MPLEPNWQNR GFRPKLDLYR GDNDGHGRDG YRETETTQLL  420
SKIHIQSLAS LKSSEMPTYV QFRRSHGDGQ MLHVLPPQFN PPNYQVQYPS SSSGGRIGSD  480
LSLSPTELHH RHHYQQWQAG PPQFANAAAS SGF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.104940.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4772680.0KC477268.1 Populus tomentosa AP2-2 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306481.10.0APETAL2-like family protein
SwissprotP479271e-129AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLB9H6I60.0B9H6I6_POPTR; APETAL2-like family protein
STRINGPOPTR_0005s18400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37843463
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-118AP2 family protein